PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000549056
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 405aa    MW: 45893 Da    PI: 8.1057
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000549056genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.67.7e-26275377198
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f+kv tpsdv++++++v+ k++ae+h       g    +++ l++ede g+ W++ ++y+++s++yvl+kGW +Fvk+++Lk+gD+v ++++  ++
  MDP0000549056 275 FEKVATPSDVGRLNCMVITKQHAEKHvqvqlsvG--FGRGVLLKFEDEVGKGWRFGYCYWRSSQSYVLSKGWIRFVKEKKLKAGDVVRLERSVGED 368
                    89************************88877552..23889*************************************************886688 PP

                    E..EEEEE- CS
             B3  90 felvvkvfr 98 
                    ++l++  + 
  MDP0000549056 369 KKLFIDCRP 377
                    888888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.92131197IPR001471AP2/ERF domain
SMARTSM003802.9E-6151203IPR001471AP2/ERF domain
CDDcd000187.51E-14155196No hitNo description
SuperFamilySSF541712.68E-9156198IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-11160197IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.0E-30268378IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-22272375IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-19274373No hitNo description
SMARTSM010196.7E-16275379IPR003340B3 DNA binding domain
PfamPF023622.4E-23275378IPR003340B3 DNA binding domain
PROSITE profilePS5086311.491275379IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MWKLNGVPYK AVVMLKEFKL KXPWRIAGEX SVGFEVEENH RCRITMLDSN PNDCADSSTQ  60
VPDLSCRPCG KEGHANPTCT YQYYVPKGEQ VGRGATLICT CCKKEGCHPG TNDWVGIAVP  120
NYCKICGKRY EHRTEDCPRK QGMEMVGDQA AFVGGAQIYE ESHRVWLGTF DDEEEAAKTY  180
NIASLKFRGL DAVTNFSRNQ MTPYERDVTQ ALFLESHSMA EIVDMLRKHS YANELEMYKH  240
KLYNGGALGL DAGGKSIKCH LDLMDTCSSE RELLFEKVAT PSDVGRLNCM VITKQHAEKH  300
VQVQLSVGFG RGVLLKFEDE VGKGWRFGYC YWRSSQSYVL SKGWIRFVKE KKLKAGDVVR  360
LERSVGEDKK LFIDCRPRNV DVSRIREMHG WVGQSHHSII LNRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-3727237911118DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379887.11e-149AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822808e-72RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A498J7360.0A0A498J736_MALDO; Uncharacterized protein
STRINGXP_008379887.11e-149(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-74related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]