PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000552310
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 261aa    MW: 29484.4 Da    PI: 9.4758
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000552310genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003495117223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +C+ C+++++++ +L  H +  H
  MDP0000552310  95 SCSVCSRVYPTSRLLSIHVSEaH 117
                    6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.656792IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
SMARTSM003555.494117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
SMARTSM003550.028132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MASMDGEEAR LGFPHWKPLR RRFAPESPFF ATGNIERELL AKQIALDLTE DEKHQLREMV  60
DEEGRGVFCP IVGCGARLSS LEDFEDHYNA RHTASCSVCS RVYPTSRLLS IHVSEAHDSF  120
FQSKVARGYL MYECLVEGCG LKFKNYKSRQ QHLVDKHKFP TSFEFFKKAL PSKKQRQKKN  180
QRRQVVSKNA DSSSMQVDNE TMDGLVSAVS KLSTSDSTPS AISFGRRPTR AVTFTPRAVQ  240
RGEKTGLCIS WNAENSFGRF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008362107.20.0zinc finger protein 511
TrEMBLA0A498HL221e-171A0A498HL22_MALDO; Uncharacterized protein
STRINGXP_008362107.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-112zinc ion binding;nucleic acid binding;zinc ion binding