PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000558105
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 46aa    MW: 5190.92 Da    PI: 8.9259
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000558105genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.8e-111344132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+W+++Ed++l+d+++++G g+W+t ++  g
    MDP0000558105 13 KGAWSKQEDLKLIDYIRKHGEGCWRTLPQAAG 44
                     79************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-13442IPR009057Homeodomain-like
SuperFamilySSF466891.87E-8742IPR009057Homeodomain-like
PROSITE profilePS5129414.353845IPR017930Myb domain
PfamPF002496.5E-91344IPR001005SANT/Myb domain
CDDcd001673.58E-51537No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 46 aa     Download sequence    Send to blast
MRKPCCDKQD TNKGAWSKQE DLKLIDYIRK HGEGCWRTLP QAAGN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.158768e-70leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1592344e-62KT159234.1 Prunus persica R2R3-MYB transcription factor (MYB18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017192216.11e-25transcription repressor MYB6-like
SwissprotQ388516e-18MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A498IAH43e-24A0A498IAH4_MALDO; Uncharacterized protein
STRINGEMJ250703e-24(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-20myb domain protein 6