PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000559232
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family S1Fa-like
Protein Properties Length: 57aa    MW: 6282.8 Da    PI: 11.0234
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000559232genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA108.92.6e-341561570
           S1FA 15 livllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                   +ivl+vv gll++flvgny+lyvyaq++lPP+kkkPvskkklk+e+lkqGv++PGe
  MDP0000559232  1 MIVLIVVVGLLMIFLVGNYALYVYAQRTLPPKKKKPVSKKKLKKERLKQGVSAPGE 56
                   8******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046896.0E-33156IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
MIVLIVVVGL LMIFLVGNYA LYVYAQRTLP PKKKKPVSKK KLKKERLKQG VSAPGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.22061e-93fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008355638.14e-31DNA-binding protein S1FA
SwissprotQ7XLX63e-12S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLW9SCA37e-23W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_008363827.11e-30(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54093355
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]