PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000561788
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 146aa    MW: 16011.7 Da    PI: 8.3508
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000561788genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.82.6e-162068149
            NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                   l pGfrFhPtdeel+ +yL +k+++ ++++ ++i+ vd++k+ePw++ +
  MDP0000561788 20 LSPGFRFHPTDEELIICYLMNKINDATFTTXRAIAXVDLNKCEPWEFSS 68
                   579***************************999*************972 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-151570IPR003441NAC domain
PROSITE profilePS5100512.79120145IPR003441NAC domain
PfamPF023658.6E-82274IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MTVHHXLSLL PSDPKEELPL SPGFRFHPTD EELIICYLMN KINDATFTTX RAIAXVDLNK  60
CEPWEFSSSS SSSFFAGNVP IPAPTPSATF VPFKSAPVRL RPEARTALIG GRHSLIPFQF  120
NPIRARACVI TGFCGHVGTL YTPNR*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.23e-18NAC domain containing protein 38