PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000564592

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 180aa MW: 20927 Da PI: 10.6785

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000564592	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	74	3.6e-23	3	118	22	128
NAM 22 kvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy...... 109 kv+ +l++ ++i+e+d+++++Pw Lp v +e++ yfF +++ ++ g +++rat gyWk gk+k+++++ ++e+vg++ktL f MDP0000564592 3 KVHPAPLPA-SIIPEFDVFETHPWGLPGDV--RETR-YFFYNENMNKYVGINSKRATGCGYWKPIGKKKQIVANskSNEAVGIRKTLGFCerkrrr 94 666667777.78*************554..4445.5555555555579******************98667778******777666 PP NAM 110 .....kgrapkgektdWvmheyrl 128 +++++++++t+W+mheyrl MDP0000564592 95 chnhhHESTSTTTQTRWLMHEYRL 118 6555436777778*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	29.211	1	144	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-27	2	144	IPR003441	NAC domain
Pfam	PF02365	3.9E-11	23	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MRKVHPAPLP ASIIPEFDVF ETHPWGLPGD VRETRYFFYN ENMNKYVGIN SKRATGCGYW 60 KPIGKKKQIV ANSKSNEAVG IRKTLGFCER KRRRCHNHHH ESTSTTTQTR WLMHEYRLLA 120 SQANPTQAFK AEVGNWVVFR IFQKKRRPTQ RISDDLGVVS QRSSNCKRNL RLMEEYICS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-11	2	145	37	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-11	2	145	37	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-11	2	145	37	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-11	2	145	37	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-11	2	145	40	169	NAC domain-containing protein 19
3swm_B	1e-11	2	145	40	169	NAC domain-containing protein 19
3swm_C	1e-11	2	145	40	169	NAC domain-containing protein 19
3swm_D	1e-11	2	145	40	169	NAC domain-containing protein 19
3swp_A	1e-11	2	145	40	169	NAC domain-containing protein 19
3swp_B	1e-11	2	145	40	169	NAC domain-containing protein 19
3swp_C	1e-11	2	145	40	169	NAC domain-containing protein 19
3swp_D	1e-11	2	145	40	169	NAC domain-containing protein 19
4dul_A	1e-11	2	145	37	166	NAC domain-containing protein 19
4dul_B	1e-11	2	145	37	166	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	93	RKRRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.7922	0.0	bud\| leaf\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008341263.2	1e-127	NAC domain-containing protein 83-like
TrEMBL	A0A498HF84	1e-126	A0A498HF84_MALDO; Uncharacterized protein
STRING	XP_008379587.1	1e-134	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-29	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	MDP0000564592