PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000566079
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 111aa    MW: 12509 Da    PI: 6.5092
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000566079genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS28.81.5e-09253758
           GRAS  7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs 58
                   + Ae +++++++la+al++++  la +++d+m +++++f+e +a+r++r  +
  MDP0000566079  2 DXAETIQQNNFNLAKALVTQIDYLAGSQADAMCKVTTFFAETMAHRIFRVYP 53
                   579*********************************************9433 PP
2GRAS24.14.1e-0874104221251
           GRAS 221 eserdevLklvkslsPkvvvvveqeadhnse 251
                    ++++++vL +vk+++Pk+v+vveqe++hn++
  MDP0000566079  74 PDAIENVLLVVKQMKPKIVTVVEQEVNHNGP 104
                    344578**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.1E-7253IPR005202Transcription factor GRAS
PfamPF035141.4E-574104IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MDXAETIQQN NFNLAKALVT QIDYLAGSQA DAMCKVTTFF AETMAHRIFR VYPQSPIDHS  60
FSGMLYIHFY ETRPDAIENV LLVVKQMKPK IVTVVEQEVN HNGPSRRSEG *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008372912.25e-78DELLA protein GAI1-like
SwissprotQ6EI053e-24GAIPB_CUCMA; DELLA protein GAIP-B
TrEMBLA1YIQ81e-31A1YIQ8_MALHU; GAI1
STRINGXP_008372912.12e-77(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3857422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.16e-22GRAS family protein