PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000574910

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 690aa MW: 75809.2 Da PI: 8.0388

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000574910	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.3	3.5e-17	252	320	1	69
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +W+ +ev++Li++r ++ +r++ k +++lWee+s+++ + g++rsp qCk+ w +l ++y+ +++ ++ MDP0000574910 252 KWKTDEVQKLITMRGKLRSRFQVVKGRMALWEEISRNLLADGINRSPGQCKSLWASLVQKYEXEEDAAG 320 7*************************************************************9999776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-5	244	311	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.084	245	309	IPR017877	Myb-like domain
Pfam	PF13837	1.2E-12	250	318	No hit	No description
CDD	cd12203	2.16E-18	251	313	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MEVLRPQNVN GSTENSIKGK IKITTRCLWL DKGKLIDALY KAAHXALSSC PISCPLPHME 60 RTVSEVLRKL VRKYSGKRPD VIAIAMENPA AVHADEVSAR LSGKSYVGSE VSQLRKVYDQ 120 HQIKSPSTRT QADDCKAKTH FPSQSTTTQA DEGKDNTLQS FSQQDTEESV LEDDGIEVEG 180 LLPEEDSATS SSKPEKLSSD SEDFLNAMVR LSTGDKSVED ENGLVAEQEN PQKDGPESSE 240 IPNLSKPVKR NKWKTDEVQK LITMRGKLRS RFQVVKGRMA LWEEISRNLL ADGINRSPGQ 300 CKSLWASLVQ KYEXEEDAAG FEVEEEEEEE KATGEREGNE ATGEGGCGRD REGRQWNFCV 360 PHMWNNPFQG GRRDAKTPNF CLVEQRIPLI FGVPNVGRNI SSRSVPSHVS SLANHLRNRT 420 SKSITDFDTP RSAFLDRSSS SNSRRSSGNG SAKHAYSSFN RSHRDKDREK EKERSNFGDH 480 WDRDSSDPLG NIFTSRVEKD TLRRSQSMVS RKQTEXLPRR AAIDSKSSGN SNHHNGNGLL 540 SGVGVGIQKV VFDKDFPSLG TEERPAAPDI GRVPSPGFXT AVQSLPFSFN WWGGMTSALA 600 DXPSTIIGSS SSGSFPVQPT VAATSSSGAS TAMSGLNMAE ALSQVPAKAR TVPQLSIKTQ 660 RLEELAIKQS RQLIPVTPSM PKPSVSKFH*

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MEVLRPQNVN GSTENSIKGK IKITTRCLWL DKGKLIDALY KAAHXALSSC PISCPLPHME  60
RTVSEVLRKL VRKYSGKRPD VIAIAMENPA AVHADEVSAR LSGKSYVGSE VSQLRKVYDQ  120
HQIKSPSTRT QADDCKAKTH FPSQSTTTQA DEGKDNTLQS FSQQDTEESV LEDDGIEVEG  180
LLPEEDSATS SSKPEKLSSD SEDFLNAMVR LSTGDKSVED ENGLVAEQEN PQKDGPESSE  240
IPNLSKPVKR NKWKTDEVQK LITMRGKLRS RFQVVKGRMA LWEEISRNLL ADGINRSPGQ  300
CKSLWASLVQ KYEXEEDAAG FEVEEEEEEE KATGEREGNE ATGEGGCGRD REGRQWNFCV  360
PHMWNNPFQG GRRDAKTPNF CLVEQRIPLI FGVPNVGRNI SSRSVPSHVS SLANHLRNRT  420
SKSITDFDTP RSAFLDRSSS SNSRRSSGNG SAKHAYSSFN RSHRDKDREK EKERSNFGDH  480
WDRDSSDPLG NIFTSRVEKD TLRRSQSMVS RKQTEXLPRR AAIDSKSSGN SNHHNGNGLL  540
SGVGVGIQKV VFDKDFPSLG TEERPAAPDI GRVPSPGFXT AVQSLPFSFN WWGGMTSALA  600
DXPSTIIGSS SSGSFPVQPT VAATSSSGAS TAMSGLNMAE ALSQVPAKAR TVPQLSIKTQ  660
RLEELAIKQS RQLIPVTPSM PKPSVSKFH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.9942	1e-115	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	2e-79	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000574910