PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000581293
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 520aa    MW: 56991 Da    PI: 6.4516
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000581293genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.1e-1697141147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE++++++a k++G   W++I +++g  +t+ q++s+ qk+
    MDP0000581293  97 RERWTEEEHKKFLEALKLYGRA-WRKIEEHVG-AKTAVQIRSHAQKF 141
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-1691146IPR009057Homeodomain-like
PROSITE profilePS5129421.14692146IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-994142IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1695144IPR006447Myb domain, plants
SMARTSM007175.6E-1296144IPR001005SANT/Myb domain
PfamPF002492.3E-1397140IPR001005SANT/Myb domain
CDDcd001675.59E-1099142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MSXFXLYECG EDXDKVXLWF LQAEGVRRNG XVSRRVEGEV NFAWWDEFGS TGSDGVVSAS  60
NGISVSAGGV QLKDDQFSGG NDFTPKVRKP YTITKQRERW TEEEHKKFLE ALKLYGRAWR  120
KIEEHVGAKT AVQIRSHAQK FFSKVARXPN GGNTASEEPI DIPPPRPKRK PMRPYPRKLV  180
HPLNKETSTV EQSARSASPN LSVSEQENQS PKSVLXVIGS DAMGSTDSNT PSDGLSPDSS  240
AAGVNSGNLI PSEPNPXLEE SGSTINNCSL PNXQXKMKLE LFPTDDADAG GGSAEEASAR  300
TLKLFGRTVL VTDSHRPSSR AAGDSKSLPS DVXEEKPVKT SLPCNHTDME SASGSVEHVW  360
DNFPYGRHQG IYFMQFQNQN SNVVESGTNA YPVPWWNICP PFIPFHMQQQ PANEHVDSKK  420
VEGEGSCTGS DAGTASDDEN RDKEVETXGD RHVSDKEREP NSVLQFKVSA NSAFSVLRAS  480
TGKYRKGFVP YKRCVAERDA KSSTMASGDG DGKRLRLSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.126500.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028953165.10.0protein REVEILLE 1-like
TrEMBLA0A498HHS80.0A0A498HHS8_MALDO; Uncharacterized protein
STRINGXP_009370571.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-64MYB_related family protein