PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000581761
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 138aa    MW: 15632.8 Da    PI: 11.1333
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000581761genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.5e-121654848
                     HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +del+++++++lG++ W +I  +++ gRt++++k++w+++l
    MDP0000581761 16 DDELILRLHALLGNR-WPLITGRLP-GRTDNEIKNYWNTHL 54
                     6999***********.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.6E-11262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-19257IPR009057Homeodomain-like
PROSITE profilePS5129418.911558IPR017930Myb domain
SMARTSM007174.8E-9956IPR001005SANT/Myb domain
PfamPF002492.5E-101654IPR001005SANT/Myb domain
CDDcd001671.81E-91654No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MKHLRPNIKR GNITPDDELI LRLHALLGNR WPLITGRLPG RTDNEIKNYW NTHLSRRFKN  60
PSTGKGTEKQ SNTRKRASKP QCVPSESKKN DRGHISADDG RVEEDTTITK IHIPNAIRGS  120
PFSTRITSFL LDFPVIQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018500216.12e-46PREDICTED: transcription repressor MYB6-like
SwissprotQ388518e-25MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A498I4A12e-86A0A498I4A1_MALDO; Uncharacterized protein
STRINGXP_009344053.11e-45(Pyrus x bretschneideri)
STRINGXP_009359589.14e-46(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.14e-27myb domain protein 6