PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000581845

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 51aa MW: 5679.7 Da PI: 7.7321

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000581845	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	30.8	8.3e-10	5	48	2	40
DUF260 2 CaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGas 40 C++C+vlr++C++ C+l ++ p++q +++ +++k+F+++ MDP0000581845 5 CNGCRVLRKGCSDTCILKLCLywidsPEAQCNATLFLAKFFSRN 48 *****************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.325	3	50	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-6	5	48	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 51 aa Download sequence Send to blast
MEMGCNGCRV LRKGCSDTCI LKLCLYWIDS PEAQCNATLF LAKFFSRNDL *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009354105.1	3e-23	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9M886	1e-19	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A498KND7	3e-23	A0A498KND7_MALDO; Uncharacterized protein
STRING	XP_009354105.1	1e-22	(Pyrus x bretschneideri)
STRING	XP_008363136.1	1e-23	(Malus domestica)
STRING	XP_008373879.1	1e-23	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20233	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	5e-22	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	MDP0000581845