PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000588222

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YA

Protein Properties

Length: 241aa MW: 26445.9 Da PI: 10.0514

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000588222	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	95.4	6.5e-30	73	128	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RRq+Rak+ e++ ++ rkpy+heSRh+hA+rRpRg+gGrF MDP0000588222 73 GPIYVNAKQYHGIMRRRQSRAKAVIENRA-ARLRKPYMHESRHRHAMRRPRGCGGRF 128 69*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.5E-32	70	131	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.692	71	131	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.2E-23	74	96	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.3E-26	74	128	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.2E-23	105	128	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MVTKNGCRCC RNKVLAVDVV HSTCFERSRD GQKSQAAISL QSSPGKYHGH FELGFSQPVG 60 RIMLPLNLTE DEGPIYVNAK QYHGIMRRRQ SRAKAVIENR AARLRKPYMH ESRHRHAMRR 120 PRGCGGRFLN TKTMNNGDKG TEGKQVGDGQ LFRLSGSQSS EVLQSDSGTL NSSKETNGSI 180 SNISGSEVTS MYSRGDLDCF SINHLGPSLH SLSDMRDSAR GMVIPTKWVA AGDNCCNLNV 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	6e-18	72	132	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	121	RHRHAMRRPR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008387119.1	1e-150	nuclear transcription factor Y subunit A-10-like
TrEMBL	A0A498ICE4	1e-154	A0A498ICE4_MALDO; Uncharacterized protein
STRING	XP_008350234.1	1e-151	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	6e-50	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	MDP0000588222