PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000589639
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 282aa    MW: 31300.7 Da    PI: 4.4462
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000589639genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind773.2e-2499169271
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT.EEE---SSBT CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg.Fkkvkdeekk 71 
                    Fl+k+y++++d++ ++++sws++  sfvv+d+  f  ++LpkyFkh+n++SFvRQLn+Yg F++ +++++ 
  MDP0000589639  99 FLNKTYDMVDDPDSNQVVSWSRERGSFVVWDPYIFVMSLLPKYFKHNNLSSFVRQLNTYGpFEEGEEHSQI 169
                    9********************999***********************************967666665544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-2595191IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-2196176IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-2496176IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-2099178IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-1599122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-15137149IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-15150162IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAATHTSFYR GSAQHGGMDG GVSNDSKVKV NLQALIMAEN GHKLQQQQLE ESIKLMTTTI  60
LPFILHFNNN LLKEEYPGSS SSQSGPNFDP MVMMIPPPFL NKTYDMVDDP DSNQVVSWSR  120
ERGSFVVWDP YIFVMSLLPK YFKHNNLSSF VRQLNTYGPF EEGEEHSQIE NGIYGFSDQF  180
QLSGSSNAGR ELGFSSPNLD HHSAEFRFLD LGGAGPVEFD SDEWMDRIIC GEDSTDSSNL  240
PSACNTWQGS NPGFDLYGTD SFQPHCLSRL SNPCSLPLNL N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-15971582788Heat shock factor protein 1
5d5v_B2e-15971582788Heat shock factor protein 1
5d5v_D2e-15971582788Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498HND21e-133A0A498HND2_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-26heat shock transcription factor A6B