PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000591819

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 49aa MW: 5371.35 Da PI: 8.6278

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000591819	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	30.2	1.3e-09	3	47	2	41
DUF260 2 CaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasn 41 C +C+vl+++C++ C+l+ ++ p++q +++ +++k+F +s+ MDP0000591819 3 CKGCRVLQKGCSDTCILRSCLywinsPEAQGNATLFLAKFFCRSH 47 *****************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	8.654	1	48	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-6	3	47	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 49 aa Download sequence Send to blast
MGCKGCRVLQ KGCSDTCILR SCLYWINSPE AQGNATLFLA KFFCRSHL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.23857	1e-50	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009354105.1	6e-23	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9SN23	7e-18	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2C9U0K7	3e-20	A0A2C9U0K7_MANES; Uncharacterized protein
TrEMBL	A0A2C9VYR3	3e-20	A0A2C9VYR3_MANES; Uncharacterized protein
STRING	XP_009354105.1	2e-22	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	3e-20	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	MDP0000591819