PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000593593
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 671aa    MW: 74523.5 Da    PI: 9.6068
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000593593genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-101465348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                      W t+E++ll++av+++G+ +W+++a ++         +t+  ck ++++++
    MDP0000593593 14 TWGTWEELLLACAVHRFGTQSWDSVATELRkrssnlHLLTPHACKRKFHDLR 65
                     7*****************************9999997799999999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00121167IPR001005SANT/Myb domain
PfamPF002493.1E-101464IPR001005SANT/Myb domain
CDDcd001675.92E-51464No hitNo description
SMARTSM002975.0E-13107406IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.9E-15298423IPR001487Bromodomain
SuperFamilySSF473703.79E-17301409IPR001487Bromodomain
CDDcd043694.32E-14310401No hitNo description
PROSITE profilePS5001410.429322387IPR001487Bromodomain
PfamPF004391.9E-9322391IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MDKPANFPEK QTPTWGTWEE LLLACAVHRF GTQSWDSVAT ELRKRSSNLH LLTPHACKRK  60
FHDLRRRFND AVSAASDDDK SPILWLDQLR QRRLDELRLE LQRYDRSIVS LQSKVERLKE  120
VREQSLRETE KPVGKSDLEK TGEVEIKPAD VSPEKKDISV RDGRSFDESN TTDPKPEEPG  180
TGDADTGNGS EPDEPGEXAG EEIGTADKSS NPAVEDSCNG SSDSVAKEPA VMESEKGNSR  240
ELRESVAESK GGEEGTKESR QSSSDVQSSA SLSRKAGEEP EPVGPEEHGE PDQEDQSPAM  300
KGVPVESQPL VDFLEILRSL KFASFFERRL HSQDYTKMIR QHVDFEMVQT RLEGGWYSRC  360
SRSLFFRDML LICNNAIVFF GKKSPEYKAA CELRSLVSKE MAHLAPKQDP XPKEETPTQP  420
APPVNPEPET SDSLLAKSKL SLPLNACRKR SSITARASTS SSGPERRKEQ ASTFRDVKPA  480
INWKQKEESS DEIEKLHVTK RRRKERRRSS TRNNTTKNVR TRSNTNNDRN SDVNENSESK  540
AETEKKSRVL SSNENSESKA ETEKRSSNNA GGKKLSAXNF LSRIKSSSSK TGSLLEASKT  600
PENNSKGGRA EQRKNGNGKG NTQKDQGSRR GSGGRQAAKE QDSPSKRSVG RPSKRAAATT  660
TGPAKRARGR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947971.10.0uncharacterized protein LOC103430276
TrEMBLA0A498I3T20.0A0A498I3T2_MALDO; Uncharacterized protein
STRINGXP_009348969.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.19e-59DNA-binding bromodomain-containing protein