PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000594000

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

TCP

Protein Properties

Length: 171aa MW: 19536.5 Da PI: 8.4471

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000594000	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	82.8	8.4e-26	60	134	2	73
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec 73 g+kdrhsk++T +g RdRRvRls+++a++++dLq++LG+ ++sk ++WLl + ++ l+g + +ec MDP0000594000 60 FGGKDRHSKVCTIRGFRDRRVRLSVPTAIQLYDLQERLGLNQPSKVVDWLLDDDHNQVRLLPGKehevqryK----HEC 134 689*********************************************************999955433330....333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.6E-25	62	140	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.415	62	120	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MGVERYYQLA KXPATIGYRK LENGLPEGGE EQQKYSGGXL WSSTTSRECD PRIVRASRAF 60 GGKDRHSKVC TIRGFRDRRV RLSVPTAIQL YDLQERLGLN QPSKVVDWLL DDDHNQVRLL 120 PGKEHEVQRY KHECSYQPSS SSFWLLGFSK ATKEGSLYVS TLKMIEEEDE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-15	67	121	1	55	Putative transcription factor PCF6
5zkt_B	1e-15	67	121	1	55	Putative transcription factor PCF6
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.22987	2e-86	bud\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269\|PubMed:25378179}.
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and siliques. {ECO:0000269\|PubMed:17307931}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM501067	1e-44	KM501067.1 Malus domestica TCP domain-containing protein 13 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004499467.1	3e-37	transcription factor TCP5-like
Refseq	XP_022022566.1	5e-38	transcription factor TCP13-like isoform X2
Swissprot	Q9LEZ9	5e-35	TCP17_ARATH; Transcription factor TCP17
TrEMBL	A0A4D9BZV8	5e-37	A0A4D9BZV8_SALSN; Uncharacterized protein
STRING	XP_008348175.1	7e-72	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF932	34	119

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08070.1	2e-37	TCP domain protein 17

Link Out ? help Back to Top
Phytozome	MDP0000594000

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]