PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000595519

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YB

Protein Properties

Length: 195aa MW: 21545.5 Da PI: 9.816

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000595519	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	37.2	6.9e-12	8	93	5	84
NF-YB 5 drflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 ++lP a v r++k l + k + k+a e fi ++++ a+d c+++kr+ti+gdd+l al ++ f ++++pl+ MDP0000595519 8 AEELPKAIVRRVVKDKLSQCHKgdgdliVHKEAILAFSESSRIFIHYLSATANDICREKKRQTISGDDVLKALEEIEFPEFIKPLE 93 5789********9998876644445467788888899999****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.5E-25	6	93	IPR009072	Histone-fold
Pfam	PF00808	7.4E-9	10	80	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	3.81E-20	11	93	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MEKVVAEAEE LPKAIVRRVV KDKLSQCHKG DGDLIVHKEA ILAFSESSRI FIHYLSATAN 60 DICREKKRQT ISGDDVLKAL EEIEFPEFIK PLEGQSLLSL HWYMSKVAPQ IRSIWLIWMR 120 ADLRPRNPGK GAGKNEGKNA TKNAGTSGGK NAGKKAGTSK TKEVKKKRKL EESSSRKQGG 180 KDEDNQDEDG SGDE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	169	KKKRKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.14586	1e-138	bud\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008391124.1	1e-102	DNA polymerase epsilon subunit 3
TrEMBL	A0A498IMZ8	1e-101	A0A498IMZ8_MALDO; Uncharacterized protein
STRING	XP_008391124.1	1e-102	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11863	32	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	3e-36	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	MDP0000595519