PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000598367

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 262aa MW: 28978.7 Da PI: 5.8717

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000598367	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.1	2.6e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+ + + +G+g +W + +++ g++R++k+c++rw++yl MDP0000598367 14 RGPWSPEEDAALKSYLESHGTGgNWILLPKKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-22	5	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.121	9	66	IPR017930	Myb domain
SMART	SM00717	2.4E-11	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-14	14	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.31E-19	15	91	IPR009057	Homeodomain-like
CDD	cd00167	6.89E-9	16	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-7	66	89	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MGRTPCCDKD NVKRGPWSPE EDAALKSYLE SHGTGGNWIL LPKKAGLRRC GKSCRLRWLN 60 YLRPDIKHGS FTEEEDSIIC SLYNQMGSRQ KKLXVLGGKV KNISSKEREP TITNNAIFSG 120 IRKTEEPQDP AFSTFQPATL QTLSDVNSGL NAYNQTXSLN PDQLYSPKFL GFSNFGASSR 180 RSFSTTVSLS QEGSSVSDSS SIAGNGYLDQ DSWFCMDYGY GLAYDNNVNY YGMCFEKTTS 240 EAVPSGCTDL GELFQAEIYN Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-12	14	96	7	87	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008393672.2	0.0	transcription factor MYB87-like
TrEMBL	A0A498HTW4	1e-178	A0A498HTW4_MALDO; Uncharacterized protein
STRING	XP_008393672.1	1e-173	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	5e-50	myb domain protein 84

Link Out ? help Back to Top
Phytozome	MDP0000598367