PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000598637

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 513aa MW: 55396.6 Da PI: 5.8557

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000598637	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	149	209	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s MDP0000598637 149 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 209 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-31	146	206	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-32	151	207	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	153	207	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	155	191	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MSEAAKDPAI KLFGKTIPVL SSDGDSVGVA GAPEXDPSAG TVAEETVDQD RAASSSSNSS 60 PEVNTHRDRE EKEVNDNKDT LGEKPIQTKQ ENGITALSSE ELKNPDAASI IGVNPESPVE 120 KENATLKTEK TEEEQSETSN SQDKTLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC 180 KNCQRYWTAG GTMRNVPVGA GRRKNKNSAS HYRHITVSEA MPNAQADVLN GVHHPSVKQN 240 GTVLTFCGDM PLCESMASVL HLADKNIQSC TRNGFQKPEG SRIPASXGGG VNGDDHLTGS 300 TVTDSNSKDE AFKSGSQEQV MQNYQGFPPQ IXCFPGAPWP YPWNSSQWSS PVTPPAFCPP 360 GYPMPFYPAA AYWGCAVQGP WNIPWLPXPS SSNNSAPSSG PNSPTLGKHS REENTXKQNS 420 SEEEEPPKEK SAEKNLWIPK TLRIDDPGXA AKSSIWATLG IKNDKADSVS SGGLFKAFQS 480 KGDQKNHLSD ASPVLQANPA ALSRSLNFQE SS*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MSEAAKDPAI KLFGKTIPVL SSDGDSVGVA GAPEXDPSAG TVAEETVDQD RAASSSSNSS  60
PEVNTHRDRE EKEVNDNKDT LGEKPIQTKQ ENGITALSSE ELKNPDAASI IGVNPESPVE  120
KENATLKTEK TEEEQSETSN SQDKTLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC  180
KNCQRYWTAG GTMRNVPVGA GRRKNKNSAS HYRHITVSEA MPNAQADVLN GVHHPSVKQN  240
GTVLTFCGDM PLCESMASVL HLADKNIQSC TRNGFQKPEG SRIPASXGGG VNGDDHLTGS  300
TVTDSNSKDE AFKSGSQEQV MQNYQGFPPQ IXCFPGAPWP YPWNSSQWSS PVTPPAFCPP  360
GYPMPFYPAA AYWGCAVQGP WNIPWLPXPS SSNNSAPSSG PNSPTLGKHS REENTXKQNS  420
SEEEEPPKEK SAEKNLWIPK TLRIDDPGXA AKSSIWATLG IKNDKADSVS SGGLFKAFQS  480
KGDQKNHLSD ASPVLQANPA ALSRSLNFQE SS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.16123	0.0	bud\| fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028963647.1	0.0	cyclic dof factor 2
TrEMBL	A0A498J6Y9	0.0	A0A498J6Y9_MALDO; Uncharacterized protein
STRING	XP_008379360.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-88	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	MDP0000598637