PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000599449
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 226aa    MW: 26100.5 Da    PI: 9.7231
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000599449genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.34.1e-131251342
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                   i n+  r+ ++ kR++g  KK +E+S+LCd+ v+ i++s+
  MDP0000599449 12 IINDACRKASYNKRKKGFVKKMKEISILCDVPVCGILYSQ 51
                   668999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-13261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.825251IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-20396IPR002100Transcription factor, MADS-box
CDDcd002661.63E-23386No hitNo description
PRINTSPR004041.1E-5424IPR002100Transcription factor, MADS-box
PfamPF003199.5E-121251IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-52439IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAGRKKVKLA YIINDACRKA SYNKRKKGFV KKMKEISILC DVPVCGILYS QYESRPIVWP  60
NPLEVQRLIT QFRNMPEDER NKKMVNHEMF LKQRIEKEQE KLNKLKKENR EKQIRMLMNQ  120
CLAGRPLTGL NLDGLNDMDC MIKGSLTEIV TQIKSRKEKE LAEMNQPQVA PPQVLAATTD  180
QNMHAAMETQ VFDQSNIYTK QTVPWFLGDV PNQQFGFVDD QIPPL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388916.11e-168agamous-like MADS-box protein AGL80
TrEMBLA0A498IET81e-166A0A498IET8_MALDO; Uncharacterized protein
STRINGXP_008388916.11e-167(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-32AGAMOUS-like 80