PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000599845
Common NameHD12
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 325aa    MW: 36407.4 Da    PI: 4.5391
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000599845genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.6e-1989142356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++t++q++ Le+ F  ++++  e++  LAk lgL+ rqV +WFqNrRa++k
  MDP0000599845  89 KKRRLTADQVQFLEKSFDVENKLEPERKVLLAKDLGLQPRQVAIWFQNRRARWK 142
                    56689************************************************9 PP
2HD-ZIP_I/II1291.9e-4189179292
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    kkrrl+++qv++LE+sF+ e+kLeperKv la++Lglqprqva+WFqnrRAR+ktkqlEkdye L+++y++lk++ e+L+ke+++L++e++
  MDP0000599845  89 KKRRLTADQVQFLEKSFDVENKLEPERKVLLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEELQANYNNLKANCESLSKENDKLKAEVT 179
                    9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1978146IPR009057Homeodomain-like
PROSITE profilePS5007116.64984144IPR001356Homeobox domain
SMARTSM003892.3E-1886148IPR001356Homeobox domain
CDDcd000863.03E-1687145No hitNo description
PfamPF000462.7E-1689142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1991151IPR009057Homeodomain-like
PRINTSPR000319.5E-5115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000319.5E-5124140IPR000047Helix-turn-helix motif
PfamPF021831.9E-14144185IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAGGRVYGGG SSSGLSALFQ NQRGSERLDS LFLSGSSNSS SASFLGSRSM VSFEDVRGGS  60
GSNRSLFRQF EHEDNGDDDL DEYLHQPGKK RRLTADQVQF LEKSFDVENK LEPERKVLLA  120
KDLGLQPRQV AIWFQNRRAR WKTKQLEKDY EELQANYNNL KANCESLSKE NDKLKAEVTV  180
LSDKLHLKEK ERGNSELSDT NRLSQEPPQK PIADTVSEGE VSKVSAVASK QEDLSSGRSD  240
IFDSDSSHYT DGVHSSLLEP GDSSYAFEPE QSDLSQDEED NFTKSMLPPY IFPKIEDXDY  300
SDTPANSCNY AFPVEDHAFW SWSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
129GGRVYGGG
2136144RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.25940.0bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315820.10.0homeobox-leucine zipper protein HAT5-like
TrEMBLD9ZJ060.0D9ZJ06_MALDO; HD domain class transcription factor
STRINGXP_008364621.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-44homeobox 1