PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000600286

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 121aa MW: 13325.5 Da PI: 6.2216

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000600286	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.3	2.2e-10	16	43	19	47
TTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqky 47 ++ + W++Ia +++ gRt++++k++w+++ MDP0000600286 16 HPVDKWSKIAGRLP-GRTDNEIKNHWNTH 43 55567*******.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.231	1	48	IPR017930	Myb domain
CDD	cd00167	9.74E-9	15	44	No hit	No description
Pfam	PF00249	4.5E-8	16	43	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.09E-9	16	53	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.4E-14	17	61	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MPAYDLAPPS SSQPLHPVDK WSKIAGRLPG RTDNEIKNHW NTHIKKKLLR MGIDPVTHEP 60 LHKEEELPSN IKENNSSSSS HDHDDHDNNL PADKSINGVH NSQENDQNVV NSSGSEGINS 120 *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009354562.1	1e-49	PREDICTED: protein ODORANT1-like
Refseq	XP_009354566.1	1e-49	PREDICTED: protein ODORANT1-like
TrEMBL	A0A498K0J6	3e-42	A0A498K0J6_MALDO; Uncharacterized protein
STRING	XP_009354562.1	4e-49	(Pyrus x bretschneideri)
STRING	XP_009354566.1	4e-49	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16895	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22680.1	1e-24	myb domain protein 85

Link Out ? help Back to Top
Phytozome	MDP0000600286