PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000605482
Common NameMADS91
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 150aa    MW: 17191.8 Da    PI: 9.806
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000605482genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.85.2e-32959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  MDP0000605482  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59
                   79***********************************************96 PP
2K-box68.91.6e-2380143669
          K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                    +++  +++ es+++e+ kLk + e+Lqr+qR+llGe+L++L+ keL+qLe+qLe slk++R +K
  MDP0000605482  80 QVNIPAKELESSYREYMKLKGRCESLQRTQRNLLGEELGPLNTKELEQLERQLEASLKQVRFTK 143
                    555678899****************************************************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.165161IPR002100Transcription factor, MADS-box
CDDcd002652.75E-43279No hitNo description
SuperFamilySSF554552.88E-33276IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-33323IPR002100Transcription factor, MADS-box
PfamPF003196.3E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-333859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-1887143IPR002487Transcription factor, K-box
PROSITE profilePS5129710.99488149IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGKLYEFCSS  60
PSILQTVDRY QKCSYGAVDQ VNIPAKELES SYREYMKLKG RCESLQRTQR NLLGEELGPL  120
NTKELEQLER QLEASLKQVR FTKGPFEIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-2075146175Developmental protein SEPALLATA 3
4ox0_B3e-2075146175Developmental protein SEPALLATA 3
4ox0_C3e-2075146175Developmental protein SEPALLATA 3
4ox0_D3e-2075146175Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29530.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed early during flower development.
UniprotTISSUE SPECIFICITY: Expressed mainly in carpels, and weakly in stamens.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Functions with SEPALLATA2/AGL4 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels, and to prevent the indeterminate growth of the flower meristem. Forms a heterodimer via the K-box domain with AGAMOUS, that could be involved in genes regulation during floral meristem development.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4152360.0KC415236.1 Malus domestica cultivar Fuji Beni Shogun MADS9-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315825.12e-96developmental protein SEPALLATA 1-like
SwissprotP293822e-82SEP1_ARATH; Developmental protein SEPALLATA 1
TrEMBLD9ZJ483e-96D9ZJ48_MALDO; MADS domain class transcription factor
STRINGXP_008365428.13e-98(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.18e-85MIKC_MADS family protein