PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000608975
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 197aa    MW: 22259.7 Da    PI: 6.2287
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000608975genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000632244123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y C+ C++ F +   L  H+++H
  MDP0000608975 22 YACSFCKREFXSAQALGGHMNVH 44
                   89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.21E-61948No hitNo description
Gene3DG3DSA:3.30.160.600.0012047IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1982249IPR007087Zinc finger, C2H2
PfamPF139124.3E-62245IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDCINFFEGE NLCDISWATR NYACSFCKRE FXSAQALGGH MNVHRRDRAR LRLLPHTLSS  60
EMCPQNPNPS SYFATSSSSS LSSCHSLFSP SLRTRVSAPS SASSMDENKK LRYDYWPENH  120
FPDLIPKKGM GGGVEHEAGH TFKGFAQRDD EYFNKIDLEK ENNIIRVDLG LDLDLDIGLL  180
KDHKEEVDLE LRLGHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959495.11e-144transcriptional regulator SUPERMAN-like
TrEMBLA0A498JQT91e-143A0A498JQT9_MALDO; Uncharacterized protein
STRINGXP_009354969.17e-97(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1696368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-18C2H2 family protein