PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000612884
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 153aa    MW: 16909.4 Da    PI: 7.6616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000612884genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.8e-1221591152
            AP2 11 krgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkk 52
                   + grW A+I      g  +k+ +lg+fgt eeAa+a++ a+ k
  MDP0000612884 21 SMGRWQARIGX----GtGNKHLYLGTFGTQEEAAEAYDIAAIK 59
                   68******999....4446*********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.26774IPR001471AP2/ERF domain
SMARTSM003804.7E-71578IPR001471AP2/ERF domain
PfamPF008473.7E-72159IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-102268IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-102260IPR001471AP2/ERF domain
CDDcd000187.92E-152368No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEEKAARAYG LAALKYWDIT SMGRWQARIG XGTGNKHLYL GTFGTQEEAA EAYDIAAIKC  60
PRTTPTSNPT MDYQTADSEH VLKRSRPFEI TDEXNNLPVN MLPVAYPNQS HGQSSYSSND  120
LPKSVVMTLR PGSTVKSMDF HPMQQIXLLG KL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription corepressor of Zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028955356.11e-88topless-related protein 4-like isoform X6
RefseqXP_028955357.11e-88topless-related protein 4-like isoform X7
RefseqXP_028958283.12e-89topless-related protein 4-like isoform X1
RefseqXP_028958284.12e-89topless-related protein 4-like isoform X1
RefseqXP_028958285.12e-89topless-related protein 4-like isoform X1
RefseqXP_028958286.12e-89topless-related protein 4-like isoform X1
SwissprotQ27GK74e-32TPR4_ARATH; Topless-related protein 4
TrEMBLA0A498KK496e-47A0A498KK49_MALDO; Uncharacterized protein
STRINGXP_008353570.11e-91(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.13e-16AP2 family protein
Publications ? help Back to Top
  1. Yang ZN,Ye XR,Molina J,Roose ML,Mirkov TE
    Sequence analysis of a 282-kilobase region surrounding the citrus Tristeza virus resistance gene (Ctv) locus in Poncirus trifoliata L. Raf.
    Plant Physiol., 2003. 131(2): p. 482-92
    [PMID:12586873]
  2. Long JA,Ohno C,Smith ZR,Meyerowitz EM
    TOPLESS regulates apical embryonic fate in Arabidopsis.
    Science, 2006. 312(5779): p. 1520-3
    [PMID:16763149]
  3. Tao Q, et al.
    The TIE1 transcriptional repressor links TCP transcription factors with TOPLESS/TOPLESS-RELATED corepressors and modulates leaf development in Arabidopsis.
    Plant Cell, 2013. 25(2): p. 421-37
    [PMID:23444332]
  4. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  5. Ke J, et al.
    Structural basis for recognition of diverse transcriptional repressors by the TOPLESS family of corepressors.
    Sci Adv, 2015. 1(6): p. e1500107
    [PMID:26601214]