PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000615948
Common NameHD7
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 238aa    MW: 27598.7 Da    PI: 5.153
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000615948genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.7e-203788556
                   SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   ++f++eq+  Le+ Fe ++++  +++ +LA++lgL+ rqV +WFqNrRa++k
  MDP0000615948 37 RRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWK 88
                   48*************************************************9 PP
2HD-ZIP_I/II117.66.9e-3836122389
    HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     rr+s+eq++lLE+ Fe+++kLep+rKv+lareLglqprqva+WFqnrRAR+k+kq+E+d ++L++ yd+l+ + e+L++e+++L  
  MDP0000615948  36 TRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWKSKQMERDLRSLREDYDKLACRFESLKEEKQSLLM 122
                    69********************************************************************************99853 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.26E-192591IPR009057Homeodomain-like
SMARTSM003891.0E-182994IPR001356Homeobox domain
PROSITE profilePS5007117.2813090IPR001356Homeobox domain
CDDcd000863.23E-163791No hitNo description
Gene3DG3DSA:1.10.10.605.1E-203795IPR009057Homeodomain-like
PfamPF000463.4E-173788IPR001356Homeobox domain
PRINTSPR000313.4E-66170IPR000047Helix-turn-helix motif
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
PRINTSPR000313.4E-67086IPR000047Helix-turn-helix motif
PfamPF021831.3E-990131IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MERRKEECYE EENLDYVSGP EPQFATKRKK NKGTNTRRFS DEQISLLESI FEADSKLEPR  60
RKVQLARELG LQPRQVAIWF QNRRARWKSK QMERDLRSLR EDYDKLACRF ESLKEEKQSL  120
LMQQLQKLND LVGTSRDGAP TEDSLMNQTA DGSSYKDGNC ETTAQVRLEE ELERRGVIDS  180
HTSNDVGGEY GDERHDELLK IGQLDASATP QELHRLDSGS ILFDPSRCNL HWLNFWA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12637KRKKNKGTNTRR
28290RRARWKSKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.79630.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315917.11e-171homeobox-leucine zipper protein ATHB-7-like
TrEMBLA0A498KJ651e-172A0A498KJ65_MALDO; Uncharacterized protein
STRINGXP_008381418.11e-172(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.21e-32homeobox 7