PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000616011

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 367aa MW: 40481.8 Da PI: 9.5818

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000616011	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.1	1.5e-20	55	146	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+ +re++ +lrrg+lk+++W++v++++ + ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++a MDP0000616011 55 CWSHDETVALIDSYREKWYSLRRGNLKATHWQDVADAIaricPAASPAKTAVQCRHKMEKLRKRYRTEIQRARSMpLSRFTSSWVHFKRMDA 146 7*****************************99999876667788899*********************977999********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-20	54	147	No hit	No description
SMART	SM00595	6.9E-12	63	152	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MASPPSSPQD DSIIPLQSEP PQGVPLALPA PPLSQSQQTQ PNPTPPSSRR LPPPCWSHDE 60 TVALIDSYRE KWYSLRRGNL KATHWQDVAD AIARICPAAS PAKTAVQCRH KMEKLRKRYR 120 TEIQRARSMP LSRFTSSWVH FKRMDAMEKG PAAGKRENSE SPGEEEDNEE NEEEEDPDQE 180 LYEELRYGSN MKSMSKLYRN GAGVGGGSGG SGGGGGPGSG FRIRIPTGVS IAQPGTKVYP 240 KMDQKFGMNS NPGSNPGSGY GSAKVMRESG NSGRPGLGKR ERDGRERERD PVAEMVSAIK 300 LLGDGFVRME QMKMEMAREI ETMRMDMEMK RTEMILESQQ RIVEAFAKAV SEKKKKAAKR 360 MPSPEA*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MASPPSSPQD DSIIPLQSEP PQGVPLALPA PPLSQSQQTQ PNPTPPSSRR LPPPCWSHDE  60
TVALIDSYRE KWYSLRRGNL KATHWQDVAD AIARICPAAS PAKTAVQCRH KMEKLRKRYR  120
TEIQRARSMP LSRFTSSWVH FKRMDAMEKG PAAGKRENSE SPGEEEDNEE NEEEEDPDQE  180
LYEELRYGSN MKSMSKLYRN GAGVGGGSGG SGGGGGPGSG FRIRIPTGVS IAQPGTKVYP  240
KMDQKFGMNS NPGSNPGSGY GSAKVMRESG NSGRPGLGKR ERDGRERERD PVAEMVSAIK  300
LLGDGFVRME QMKMEMAREI ETMRMDMEMK RTEMILESQQ RIVEAFAKAV SEKKKKAAKR  360
MPSPEA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.6177	0.0	bud\| leaf\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008343762.1	0.0	trihelix transcription factor ASIL2-like
TrEMBL	A0A498KN54	0.0	A0A498KN54_MALDO; Uncharacterized protein
STRING	XP_008343762.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-73	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000616011