PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000618200

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 234aa MW: 26415.9 Da PI: 8.7603

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000618200	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.5	1.1e-28	69	156	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p MDP0000618200 69 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKRE--KVVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLTP 156 ****************************************9988..999**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-26	69	156	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MELSRAGDEN ETGGSSVEGA FQLGLDDKIN LDSPRGDIIP EAVPVVSVVP ADEPYVGQEF 60 ETEAAAHAFY NAYATRVGFI IRVSKLSRSR RDGSAIGRAL VCNKEGYRMP DKREKVVRQR 120 AETRVGCRAM ILVRKVSSGK WVVTKFVKEH THPLTPGKGR RDCIYDQYPN EHDKIRELSQ 180 QLAIEKKRAA TYKRHLDLIF EHIEEHNESL SKKIQHIVES VKEIEGKEQQ GYR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.23679	2e-65	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028947477.1	1e-173	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	6e-26	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A498I9G2	1e-171	A0A498I9G2_MALDO; Uncharacterized protein (Fragment)
STRING	XP_004309808.1	1e-159	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	5e-95	FAR1 family protein

Link Out ? help Back to Top
Phytozome	MDP0000618200

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]