PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000619501

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 169aa MW: 19447.9 Da PI: 10.056

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000619501	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	70	6.3e-22	16	92	52	125
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmhe 125 +++ k+w+fF++r++++a+g r+++ t++gyWkatg+ ++v+s+++++ + lk+t+vfy+gr p+g+kt+W m+e MDP0000619501 16 HGDPKQWFFFIPRQESEARGGRPRQLTTTGYWKATGSPTTVYSSNSKHyraISLKRTMVFYTGRXPHGKKTEWKMNE 92 45678************************************85444555**********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	21.559	1	121	IPR003441	NAC domain
Pfam	PF02365	1.9E-9	9	92	IPR003441	NAC domain
SuperFamily	SSF101941	3.4E-20	16	92	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MVKKQCTNEA AGEAIHGDPK QWFFFIPRQE SEARGGRPRQ LTTTGYWKAT GSPTTVYSSN 60 SKHYRAISLK RTMVFYTGRX PHGKKTEWKM NETKPLKFMQ MIIINHQWPP PHQTLVLLLP 120 RLSMAQWNSG LDSLQLVSAR HGDQCEDHSH QLFDTGMFHD DPYRFPIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-13	13	94	65	141	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-13	13	94	65	141	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-13	13	94	65	141	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-13	13	94	65	141	NO APICAL MERISTEM PROTEIN
3swm_A	2e-13	13	94	68	144	NAC domain-containing protein 19
3swm_B	2e-13	13	94	68	144	NAC domain-containing protein 19
3swm_C	2e-13	13	94	68	144	NAC domain-containing protein 19
3swm_D	2e-13	13	94	68	144	NAC domain-containing protein 19
3swp_A	2e-13	13	94	68	144	NAC domain-containing protein 19
3swp_B	2e-13	13	94	68	144	NAC domain-containing protein 19
3swp_C	2e-13	13	94	68	144	NAC domain-containing protein 19
3swp_D	2e-13	13	94	68	144	NAC domain-containing protein 19
4dul_A	1e-13	13	94	65	141	NAC domain-containing protein 19
4dul_B	1e-13	13	94	65	141	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008387035.2	2e-51	NAC domain-containing protein 90-like
Swissprot	Q9M290	1e-30	NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBL	A0A498IJM7	3e-50	A0A498IJM7_MALDO; Uncharacterized protein
STRING	XP_009372523.1	4e-49	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.1	6e-33	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	MDP0000619501