PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000652898
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 294aa    MW: 32082.9 Da    PI: 8.4156
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000652898genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038226248223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +Cp Cg  Fs+  +L+ H  + H
  MDP0000652898 226 VCPQCGAKFSSVTTLVDHVEKvH 248
                    6*****************99888 PP
2zf-C2H215.83.9e-05266287323
                    ETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                    Cp+C+k F+++  L+ H  + H
  MDP0000652898 266 CPKCSKGFRDPVALVEHVERdH 287
                    *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.52E-11458No hitNo description
PROSITE profilePS510397.8141056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.2E-101153IPR000058Zinc finger, AN1-type
SMARTSM001541.8E-51352IPR000058Zinc finger, AN1-type
PfamPF014284.8E-131349IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.104.4E-1191147IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.09E-893144No hitNo description
PROSITE profilePS510397.85598146IPR000058Zinc finger, AN1-type
SMARTSM001540.093101142IPR000058Zinc finger, AN1-type
PfamPF014288.9E-8101141IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.058225248IPR007087Zinc finger, C2H2
SMARTSM003550.042225248IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280227248IPR007087Zinc finger, C2H2
PfamPF138946.2E-4227248No hitNo description
Gene3DG3DSA:3.30.160.604.0E-4229248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.1264287IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.829264292IPR007087Zinc finger, C2H2
PROSITE patternPS000280266287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGTPEFPDLG RHCYVAECQQ IDFLPFTCDS CHQVFCLEHR SYIKHNCPKG DRKNVTVVIC  60
PLCAKGVHLI PDEDPNITWE RHVNTDCDPS NYEKATKKKK CPVPGCKEXL TFSNTIKCRD  120
CTVDHCLKHR FGLDHKCPGP KKPEAGFPFL GYLSRSRKEV SKPNHAPAAS SXNWSSFLTA  180
ASSFRASAEA SVAKLSSELS QKWQIAKDGT GQSSSSSGSR NGQGEVCPQC GAKFSSVTTL  240
VDHVEKVHEK GGNRAAAVKK VTIDACPKCS KGFRDPVALV EHVERDHGGT SRA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.36680.0stem
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008359556.20.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
SwissprotQ8VZ421e-131SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A498ICB20.0A0A498ICB2_MALDO; Uncharacterized protein
STRINGXP_008359556.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-125C2H2 family protein