PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000654861
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 292aa    MW: 33319.9 Da    PI: 5.0495
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000654861genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-1660103146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ + eE+el+++++k+lG++ W++Ia +++ gRt++++k++w++
    MDP0000654861  60 RGNISSEEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 103
                      7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-5557IPR009057Homeodomain-like
PROSITE profilePS500904.437954IPR017877Myb-like domain
SMARTSM00717611356IPR001005SANT/Myb domain
SuperFamilySSF466891.8E-1845111IPR009057Homeodomain-like
PROSITE profilePS5129424.61955109IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2458108IPR009057Homeodomain-like
SMARTSM007179.3E-1659107IPR001005SANT/Myb domain
PfamPF002491.4E-1460103IPR001005SANT/Myb domain
CDDcd001672.67E-1164105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGRKPCCDKE GLNRGAWSAW EDRPLPTTLK QMEKENGETF LKELSCRLRW LNYLRPGIKR  60
GNISSEEEEL IIRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNTSLSKKTE QGSDKAPHER  120
SSTTNSNEYT PKPKSESKSH RTVQVIRTKA FKCRKIVIPS HLDGHDQMVD RSNVXPGLVP  180
CESPSPSGAQ DHQEDSLLCG MLIDFNIDDL ISDLLNTDKF LQDQINKCDQ EMEDGITKLE  240
DLTGEPMLEN WTATDHDHHD DPIFQPNDDQ DRVDRLNAIS YFLNSEDGDE K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-18121105109B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.272261e-177leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1268591e-158KJ126859.1 Malus hybrid cultivar MYB6 (MYB6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340436.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A498HXA70.0A0A498HXA7_MALDO; Uncharacterized protein
STRINGXP_009340436.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1893346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-38myb domain protein 7