PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000658202
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 549aa    MW: 61985.9 Da    PI: 4.2597
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000658202genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.8e-08250298247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      + W++eE++l+ ++v   ++      W++ +  ++  Rt k+++s+++++
    MDP0000658202 250 QTWSEEEEQLFHRVVFSNPTSlgknFWDKLSTVFP-SRTKKEIVSYYFNV 298
                      68*************6665555665**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.4E-5248301IPR001005SANT/Myb domain
PfamPF002493.3E-7250298IPR001005SANT/Myb domain
SuperFamilySSF466891.25E-5250299IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-5251297IPR009057Homeodomain-like
CDDcd001678.53E-8251299No hitNo description
PROSITE profilePS500906.249252299IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MVQKRSLDDE EIFVSFKHPR QVGHNKELVS FSESVFPGDV SEEPETLGEE NGCAKDNNRX  60
EEEISDDKFS GLPKGGEDVE TSAPRSFTIS SWTTSSNSGE DSLFEASFHG SFFPEYFNHE  120
RSIRTLTQFE DIYSVLLDHP PRKSASIGPE HQADVPLWGA QGAHNNFDLE DEKRLMGTCV  180
IPMPDSDTEL FTDTGCIVGK GRIDCSCEDG ESVRCVRQHI LEAREKLVKT IGPKRFEELG  240
FNDMGEQVAQ TWSEEEEQLF HRVVFSNPTS LGKNFWDKLS TVFPSRTKKE IVSYYFNVFM  300
LRKRAEQNRY DPMNIDSDSD EWQGSNDYGX NQPSVTEDED SVVESPEGRR VPGYKRNWKD  360
DLEVLDEDDT DETCDENVDV DMFGRGPEQI LDRCYGLVDN CSSCPIAQLQ DKISWDEKGD  420
QEVQDDSCTS FDAAVAASQE SQRKSENXNH WSGSFNRGDH EFVLEPCDAK IWDAGYMTCP  480
KNKSNESRQQ APPPPIKRPA NTGSMAMLAA PFLTLVYGCT YNPDLQHRFL NHKDADLDES  540
XPSDFGLP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393206.20.0uncharacterized protein LOC103455401
TrEMBLA0A498I5I80.0A0A498I5I8_MALDO; Uncharacterized protein
STRINGXP_008393206.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2153810