PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000658409
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 946aa    MW: 104425 Da    PI: 4.4122
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000658409genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.7e-521042391128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++++ePwdLpk   +k++++ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s
  MDP0000658409 104 LPLGFRFRPTDEELINHYLRLKINGRDSEV-RVIPEIDVCRWEPWDLPKlsVIKSDDQEWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKS 198
                    699************************999.99***************5458889999************************************** PP

            NAM  95 k.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +       ++ +vg+kktLvfy+gra kge+t+W+mheyr+
  MDP0000658409 199 RqcksasnSNGQVGMKKTLVFYRGRAXKGERTSWIMHEYRA 239
                    988777766667***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-6097262IPR003441NAC domain
PROSITE profilePS5100556.812104262IPR003441NAC domain
PfamPF023656.1E-27105238IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 946 aa     Download sequence    Send to blast
MGGEKESENG ELPDLEKQQL GGPETSSLPS LATVDTVLPL QQVVVSGGAS SEVHEPPTVT  60
ATVKFSEEVP SPKKDHLSRT SSSHEQCRRE DQWSEMAELS MESLPLGFRF RPTDEELINH  120
YLRLKINGRD SEVRVIPEID VCRWEPWDLP KLSVIKSDDQ EWFFFCPRDR KYPNGHRSNR  180
ATDAGYWKAT GKDRTIKSRQ CKSASNSNGQ VGMKKTLVFY RGRAXKGERT SWIMHEYRAT  240
QKELDGTGPG QGAFVLCRLF HKPEEKADVP KYDEVEQTGL SPTTTKSSPD ESSDIIQETA  300
TSEIQGENQA EGIMRWLTDN SDNVTPDALP PLPDIFMASD VEDQGAVETG IQGHLTIEEN  360
PAFYESLGGP IDCKVFTPLH SQINAELEHF MGSPFTSDFG NYDNGLYFQD GTCEQDVSLT  420
ELLDEFGNSH YESSCEESTS QKNLVVGNET YLSGNACTTL PVNSCFNGAW DNTDANITQH  480
DLQRMASGLY NEQFGSDDLQ NTSFGYWQAE AQASLDDQKP RMGNMADGYL SECSFAEQFP  540
VSSVDDGLDD STSWNHGVDH VGGTGIKIRA RGPQLQPNTD NFVYQGTAAR RIYLSVDRSS  600
GSNTNGNEGN ENYSREEDEV QSTITQPRED IGQSPTSDEQ EEEHAIFNDK EELSGRNNSI  660
NNGCDPDGRS RIMIRTRQPQ QRSNSDSSVT QGTAPRRIRL QMNISSGSIA DSNVRDTDDG  720
GEDEVQSTNT EAREAIQQSL TSDEQEKGHA EINNEDLATM KNSVSYGSDV GRTGIKTKAP  780
EPQQPLSSDD FVTQGTAPRR IGLQMKSSPW SVADSNVRDT TPGEEDNVQS TIHEVKEARE  840
KICNFDEQDA ESHLSKSDVN RKIIDDSPTE LVDESSGTAG EAPRKVRLRT ARDDALPSNH  900
IGKSMPSKTL PKGHGLSPTF VISVGIPLAV TLFVAFSGIW MTFRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-439926212165NO APICAL MERISTEM PROTEIN
1ut4_B5e-439926212165NO APICAL MERISTEM PROTEIN
1ut7_A5e-439926212165NO APICAL MERISTEM PROTEIN
1ut7_B5e-439926212165NO APICAL MERISTEM PROTEIN
3swm_A5e-439526211168NAC domain-containing protein 19
3swm_B5e-439526211168NAC domain-containing protein 19
3swm_C5e-439526211168NAC domain-containing protein 19
3swm_D5e-439526211168NAC domain-containing protein 19
3swp_A5e-439526211168NAC domain-containing protein 19
3swp_B5e-439526211168NAC domain-containing protein 19
3swp_C5e-439526211168NAC domain-containing protein 19
3swp_D5e-439526211168NAC domain-containing protein 19
4dul_A5e-439926212165NAC domain-containing protein 19
4dul_B5e-439926212165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.132600.0bud| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280864.10.0uncharacterized LOC103438687
TrEMBLD9ZJA70.0D9ZJA7_MALDO; NAC domain class transcription factor
STRINGXP_008375455.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-135NAC 014