PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000663564

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 1075aa MW: 121400 Da PI: 5.1792

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000663564	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	88.8	9.9e-28	27	168	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tks 80 lp+G++F+P+d el+ e+L++k+ + + ++e+i++++ iy +P++Lp + +++ ++++fF+k+ ++yatg+rk+r+ +++ MDP0000663564 27 LPVGVKFDPSDGELL-EHLAAKCGVGNsqphMFIAEFIPTLEgdngIYCDHPENLPGA-TKDGSSIHFFHKTMNAYATGQRKRRKvdsqrsvaAEN 120 799**********.9999998766645552333345554233459*****44.4567899**************868888887779 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+k++++ + +g kk++v+y +++ +k+ek +Wvmh+y+l MDP0000663564 121 VRWHKTGKTKALIE--NGIKGWKKIMVLYksSKKGSKAEKMNWVMHQYHL 168 99******99..6689*****4434677889*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-31	17	187	IPR003441	NAC domain
PROSITE profile	PS51005	30.111	27	187	IPR003441	NAC domain
Pfam	PF02365	6.7E-13	28	168	IPR003441	NAC domain
PROSITE profile	PS51295	14.103	584	683	IPR001890	RNA-binding, CRM domain
SuperFamily	SSF75471	1.15E-14	585	659	IPR001890	RNA-binding, CRM domain
Pfam	PF01985	5.2E-14	586	657	IPR001890	RNA-binding, CRM domain
Gene3D	G3DSA:3.30.110.60	2.8E-10	586	658	IPR001890	RNA-binding, CRM domain
SMART	SM01103	1.6E-10	586	661	IPR001890	RNA-binding, CRM domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003723	Molecular Function	RNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1075 aa Download sequence Send to blast
MSVFALFNXT GNVKWMIIWV LSEWPGLPVG VKFDPSDGEL LEHLAAKCGV GNSQPHMFIA 60 EFIPTLEGDN GIYCDHPENL PGATKDGSSI HFFHKTMNAY ATGQRKRRKV DSQRSVAAEN 120 VRWHKTGKTK ALIENGIKGW KKIMVLYKSS KKGSKAEKMN WVMHQYHLGA EDDEKEGEYV 180 VSKIFYQQHK QSETNDNNVV VEDSDVNALQ TSPRTPVTNP PIPPRPGKSV WCDDVPDEAV 240 LPSSSKEAEL VQEAYHVPQS DTQFEDNIGQ PTWLAGESQA DDLDSLGETL LCKEIFGYST 300 LLNDSAPNPT DFNNNTYGVT GNSSTSCGIX DLENIELDSP PDFQLATVYL IGSTGYDDDE 360 RASGNDIEFP ILCNRRIHLT GLFSRILFSG NEANLALCNF SELMKCLGIG EEEGNEQSKA 420 LDSRLRPVAV RLKPSMFAAR KLNRHCFKSV SSLLQFNPPK NALLLRDVSA KVLSSNAVQP 480 SKPSEDCYSS SSRPANPFDG WSRSMSTSRG SSSMRSKVAK RMQKESGKTL REVRRAKKLQ 540 KKLMTENERL IYNLKRAKRK VALLLQKXKK YELPDLPAPR HDPELLTLEQ LQALKKIGFK 600 NKNYVPVGVR GVFGGVVQNM HLHWKFHETV QVCCDNFPKE KIKEMATMLA RLSGGIVALF 660 KARFEQALES QKLNIKKIEQ QLRRSGVNPE DPVAIASIQR VASSFFNAID QKDGSPYVFQ 720 GDKPSVAEHD NKLKHPEPPD EEEEEELDKF IAEIEDAAER EWAAEEAAEK EEFTRMRYWN 780 REEYGGRYRR SEEPENDDSD DEIPRPRXWR HNGKQRPNGD YEDDEEEWHS NNAVGASVLD 840 SDADDSDGTP EKFKISPRDX GRQDRIGRAK NDERFYRNSE ANNRKVNNRK IMVDDGTESE 900 NVLSDLDTAM WKSDSEEEHD STASRAANYD FQSSSDEEED LMYLKGGKER VNDSESNTDY 960 SNKARSKFEA SRVAEGRDDR IGRGNSEYFK RNAGVSPRRK PVEEDVKSED ISGDSENEIW 1020 ELNAASDSGA SKAGRFDYNS SDEEDYQVRR EEKKGNGNKS TRTRKXLDED WDSD*

Sequence ? help Back to Top

Protein Sequence Length: 1075 aa Download sequence Send to blast

MSVFALFNXT GNVKWMIIWV LSEWPGLPVG VKFDPSDGEL LEHLAAKCGV GNSQPHMFIA  60
EFIPTLEGDN GIYCDHPENL PGATKDGSSI HFFHKTMNAY ATGQRKRRKV DSQRSVAAEN  120
VRWHKTGKTK ALIENGIKGW KKIMVLYKSS KKGSKAEKMN WVMHQYHLGA EDDEKEGEYV  180
VSKIFYQQHK QSETNDNNVV VEDSDVNALQ TSPRTPVTNP PIPPRPGKSV WCDDVPDEAV  240
LPSSSKEAEL VQEAYHVPQS DTQFEDNIGQ PTWLAGESQA DDLDSLGETL LCKEIFGYST  300
LLNDSAPNPT DFNNNTYGVT GNSSTSCGIX DLENIELDSP PDFQLATVYL IGSTGYDDDE  360
RASGNDIEFP ILCNRRIHLT GLFSRILFSG NEANLALCNF SELMKCLGIG EEEGNEQSKA  420
LDSRLRPVAV RLKPSMFAAR KLNRHCFKSV SSLLQFNPPK NALLLRDVSA KVLSSNAVQP  480
SKPSEDCYSS SSRPANPFDG WSRSMSTSRG SSSMRSKVAK RMQKESGKTL REVRRAKKLQ  540
KKLMTENERL IYNLKRAKRK VALLLQKXKK YELPDLPAPR HDPELLTLEQ LQALKKIGFK  600
NKNYVPVGVR GVFGGVVQNM HLHWKFHETV QVCCDNFPKE KIKEMATMLA RLSGGIVALF  660
KARFEQALES QKLNIKKIEQ QLRRSGVNPE DPVAIASIQR VASSFFNAID QKDGSPYVFQ  720
GDKPSVAEHD NKLKHPEPPD EEEEEELDKF IAEIEDAAER EWAAEEAAEK EEFTRMRYWN  780
REEYGGRYRR SEEPENDDSD DEIPRPRXWR HNGKQRPNGD YEDDEEEWHS NNAVGASVLD  840
SDADDSDGTP EKFKISPRDX GRQDRIGRAK NDERFYRNSE ANNRKVNNRK IMVDDGTESE  900
NVLSDLDTAM WKSDSEEEHD STASRAANYD FQSSSDEEED LMYLKGGKER VNDSESNTDY  960
SNKARSKFEA SRVAEGRDDR IGRGNSEYFK RNAGVSPRRK PVEEDVKSED ISGDSENEIW  1020
ELNAASDSGA SKAGRFDYNS SDEEDYQVRR EEKKGNGNKS TRTRKXLDED WDSD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028963523.1	0.0	uncharacterized CRM domain-containing protein At3g25440, chloroplastic-like
TrEMBL	A0A498J2E4	0.0	A0A498J2E4_MALDO; Uncharacterized protein
STRING	XP_008341379.1	0.0	(Malus domestica)
STRING	XP_010108843.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9824	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01600.1	1e-64	NAC domain containing protein 44

Link Out ? help Back to Top
Phytozome	MDP0000663564