PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000670559
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 334aa    MW: 37443.4 Da    PI: 7.0752
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000670559genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.71.5e-0835741250
                   HHHHHHHHHHHHHHHHHHHHT-EEEEE.EE-TTSEEEEEE CS
         SRF-TF 12 tfskRrngilKKAeELSvLCdaevavi.ifsstgklyeys 50
                   +  +R ++++ KA  L  LC+a+v+v+ +++++ k++ ++
  MDP0000670559 35 STMQRSATVMRKAMNLNKLCGAQVCVVaYIGPNAKVKVWP 74
                   4468*********************99678******9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.7E-82499IPR002100Transcription factor, MADS-box
PfamPF003199.2E-63873IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MKGNSARPRR DNREEQRLAK RRKLRQRQQS EQRKSTMQRS ATVMRKAMNL NKLCGAQVCV  60
VAYIGPNAKV KVWPEDEDLA KAIISKHQAA AIKNRNNPKT REVNIYNFFQ GKMKQLEQKI  120
ELDDKELDAL SEDSLMDLAA FLESKLQKLD YPVRSIEGKS VVHLPYSYDD CNLVHKELHV  180
HQPLFDPILN CSGNLMMMGF EGQTMFSTAT ATATWPWQNS LADGHYQSAG FANCSNCNMM  240
TAGLVDPSVS AEAGTSGSST LEVDQYFAWM GSDNWENNVN VLGVEDRPGS MLVFNGSDNF  300
GVMNNNLLPQ QCMPSQLDDS FPITSWRNLL SFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12026RRKLRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374388.10.0uncharacterized protein LOC103437678
TrEMBLA0A498KUM80.0A0A498KUM8_MALDO; Uncharacterized protein
STRINGXP_008374388.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1547579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.18e-10AGAMOUS-like 78