PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000674040
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 418aa    MW: 45847.7 Da    PI: 5.4931
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000674040genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.61e-101473886
       trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                   mre+gf rsp++C+ kw+nl k++kk +++ k +   +s +++y+++l+
  MDP0000674040  1 MREKGFDRSPTMCTVKWRNLLKEFKKARHQVKVG--ARSAKMSYYEDLQ 47
                   89*****************************997..56678*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-7148No hitNo description
Gene3DG3DSA:3.40.50.14604.3E-61163361IPR029030Caspase-like domain
PfamPF006561.4E-47166331No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MREKGFDRSP TMCTVKWRNL LKEFKKARHQ VKVGARSAKM SYYEDLQDLL RDRSTANSNH  60
NSVSAAAAVA TPPKLDSFVR FSNKGLEDST IPFGPMEAND RSTLNLERQL DHDGGDPLAI  120
TAADAVAVNG VPPWNWREGP ENGGEDHSSY CGRIITKDRN LEKMARKAVL IGCNYAGTKA  180
ELKGCINDVK RMYSCLVDRY GFSEDDIQVL IDTDDSYTQP TGKKNIRRAI TNLIRSADSG  240
DVLFVHYCGH GTHLPAETGD DDDTGYDECI VPTAMNLITD DDFRGFVDQL PAGCRLTIAS  300
DSCHSSGLID EAIEQIGERA PRGKSASASP APAVAVLVDS RTFSRTGREM PESPPAQKQP  360
EPWKEEKKPE HQPEXTEVRE EKTIPLSSPF LSAQRRDSDP SCSSPSIHQH SSSSGEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4af8_A9e-2216733094257METACASPASE MCA2
4afr_A1e-2116733094257METACASPASE
4afv_A1e-2116733094257METACASPASE MCA2
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.156241e-161fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341347.14e-97trihelix transcription factor GT-4-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.17e-54Trihelix family protein