PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000674514
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 369aa    MW: 40962.9 Da    PI: 8.5898
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000674514genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.6e-53281551128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ 
  MDP0000674514  28 LPPGFRFHPTDEELVVHYLKKKATSAPLPV-SIIADVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSg 122
                    79****************************.89***************988899***************************************995 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    + ++vg+kk Lvfy g+ pkg kt+W+mheyrl
  MDP0000674514 123 GIQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 155
                    5677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6424189IPR003441NAC domain
PROSITE profilePS5100561.78128189IPR003441NAC domain
PfamPF023654.2E-2829155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MESTDSSTGS QQQQLQPPQP PPPPLPNLPP GFRFHPTDEE LVVHYLKKKA TSAPLPVSII  60
ADVDLYKFDP WELPAKATFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVLT  120
SGGIQKVGVK KALVFYGGKP PKGIKTNWIM HEYRLADNKP NNKPPGCDLG NKKNSLRLDD  180
WVLCRIYKKN NTHRPMDHER EDSMEDILGP LMPPSISHVG HHQNMKLHLP KSNLSYGPPF  240
MENNQIFFDG MMSSTDGSAS THQLPQKRPI VPSLYWNNQE EDDQTAADPS SSKRIQLHQL  300
DTGTNSNGDG INGGATNNNS TSIANLLSQL PQTPPLHQHA VLGSLGDGLF RTPYQLPGRN  360
WYSDSNLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-732719216168NO APICAL MERISTEM PROTEIN
1ut4_B7e-732719216168NO APICAL MERISTEM PROTEIN
1ut7_A7e-732719216168NO APICAL MERISTEM PROTEIN
1ut7_B7e-732719216168NO APICAL MERISTEM PROTEIN
3swm_A7e-732719219171NAC domain-containing protein 19
3swm_B7e-732719219171NAC domain-containing protein 19
3swm_C7e-732719219171NAC domain-containing protein 19
3swm_D7e-732719219171NAC domain-containing protein 19
3swp_A7e-732719219171NAC domain-containing protein 19
3swp_B7e-732719219171NAC domain-containing protein 19
3swp_C7e-732719219171NAC domain-containing protein 19
3swp_D7e-732719219171NAC domain-containing protein 19
4dul_A7e-732719216168NAC domain-containing protein 19
4dul_B7e-732719216168NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.98250.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}.
UniprotTISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981160.0KF198116.1 Malus hupehensis NAC domain protein (NAC32) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008386130.10.0NAC transcription factor 56-like
SwissprotQ9LD441e-121NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A498IPC80.0A0A498IPC8_MALDO; Uncharacterized protein
STRINGXP_008386130.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-123NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]