PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000678228
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 651aa    MW: 74328.8 Da    PI: 8.6139
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000678228genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-08462503240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE ell ++v ++++g   +W+ ++ ++g+gR+ +++
    MDP0000678228 462 KPWSKEEIELLRKGVVKFPKGtsrRWEVVSDYIGTGRSVEEI 503
                      69***********************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1105.5E-2293197IPR001623DnaJ domain
SuperFamilySSF465652.75E-2094202IPR001623DnaJ domain
SMARTSM002712.3E-1495170IPR001623DnaJ domain
PfamPF002261.0E-1896175IPR001623DnaJ domain
PROSITE profilePS5007618.7696178IPR001623DnaJ domain
CDDcd062576.21E-1396167IPR001623DnaJ domain
PRINTSPR006255.3E-9101119IPR001623DnaJ domain
PRINTSPR006255.3E-9119134IPR001623DnaJ domain
PRINTSPR006255.3E-9150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.607.4E-4457503IPR009057Homeodomain-like
PROSITE profilePS512937.381459514IPR017884SANT domain
SMARTSM007174.7E-6460513IPR001005SANT/Myb domain
PfamPF002499.8E-7462503IPR001005SANT/Myb domain
SuperFamilySSF466893.81E-7462505IPR009057Homeodomain-like
CDDcd001671.61E-4463503No hitNo description
PROSITE profilePS5129310.141589644IPR017884SANT domain
Gene3DG3DSA:1.10.10.605.9E-4590636IPR009057Homeodomain-like
SMARTSM007178.5E-6590642IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-7592647IPR009057Homeodomain-like
PfamPF002499.6E-6593636IPR001005SANT/Myb domain
CDDcd001675.23E-5594640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MPVQSKFCLI SYSQELVDGQ PLYASSNCLP VKALNREPAG HSFHAVALKL RGCVEENKEV  60
EDEKVVNNKE QTSIPSFDSY SSKGKKKSGG EGKEQDHYAL LGLSHLRYLA TEEQIRKSYR  120
ETALKYHPDK QAALLLNEVT EAAKQTKKDE IESHFKSIQE AYEVLIDPVK RRIYDSTDEF  180
DDEIPTECAP QDFFRVFSPA FMRNGRWSVS QPIPFLGDES TPLKEVDDFY DFWYTFKSWR  240
EFPHADEFDL EQAESRDHKR WMERQNSKLS EKARKEEYAR IRTLVDNAYK RDPRIQRRKE  300
AEKAEKQRKR EAKYLAKKLQ EEEAARAAEE ESKRKEEEAK RAAETALQQK KLKEKEKKLL  360
RKEKARLRTV SGPVTSKRLL NLSEDDVESL CSSLGTEQLR SICEKMEGKE GVERAEVLRD  420
ACGYKNDLVD KKEEEKKIQQ QNGSVETKGT VQLGSYEKKE EKPWSKEEIE LLRKGVVKFP  480
KGTSRRWEVV SDYIGTGRSV EEILKATKTV LLQKPDSSKA FDSFLEKRKP SPSIASPLTT  540
RVEVEGVRTP QPTETPAVKT DESGESSSGS AKDQTPIDPI VENGFSSGSE QDVWSAVHER  600
ALVQALKTFP KDATQRWERV AAAVPGKSVV QCKKKFALMK ESFRNKKSTA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A5e-1818529613124Zuotin
5dje_B5e-1818529613124Zuotin
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.66610.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028958256.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_028958257.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A498JSC90.0A0A498JSC9_MALDO; Uncharacterized protein
STRINGXP_009358960.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.21e-127DnaJ domain ;Myb-like DNA-binding domain