PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000679946

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 338aa MW: 38845.4 Da PI: 5.8554

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000679946	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.7	5.7e-50	183	308	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ MDP0000679946 183 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSENF 277 79*************************.89***********888889*************************************** PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +glkktLvfy+g+apkg +t+W+m+eyrl MDP0000679946 278 RSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 308 ***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF53098	4.05E-12	8	132	IPR012337	Ribonuclease H-like domain
Gene3D	G3DSA:3.30.420.10	5.7E-8	9	130	IPR012337	Ribonuclease H-like domain
CDD	cd06222	1.42E-19	11	130	No hit	No description
Pfam	PF13456	1.0E-24	12	131	No hit	No description
SuperFamily	SSF101941	2.22E-52	182	315	IPR003441	NAC domain
PROSITE profile	PS51005	51.177	182	326	IPR003441	NAC domain
Pfam	PF02365	7.4E-25	184	308	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MENTTVGTLK VNCDAAWNPQ SHKGGVGWVI RNFAGLLHSA GGRENLYRSV EIVEATALRA 60 ALQECAKKDI DSIEIETDAK TIMQMINKET GTEASLEDII HDIWNLAQTF QNATLTYAHR 120 ECNHAARAVA SYVSKDGSFM AVAETTTTSS SSTMSHDDSN KADHDHEHEH DEYVDEHEHD 180 MVMPGFRFHP TEEELVEFYL RRKVEGKRFN VELITFLDLY RYDPWELPAM AAIGEKEWFF 240 YVPRDRKYRN GDRPNRVTTS GYWKATGADR MIRSENFRSI GLKKTLVFYS GKAPKGIRTS 300 WIMNEYRLPH HETERYQKTL WDFFLDLPTD SLGLLEY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	184	308	19	142	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	184	308	19	142	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	184	308	19	142	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	184	308	19	142	NO APICAL MERISTEM PROTEIN
4dul_A	2e-52	184	308	19	142	NAC domain-containing protein 19
4dul_B	2e-52	184	308	19	142	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269\|PubMed:17653269}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB270792	1e-119	AB270792.1 Malus x domestica MdSFBB9-alpha, S9-RNase, MdSFBB9-beta genes, complete cds, Psi-SFBB9-alpha, Psi-SFBB9-beta pseudogenes.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028963306.1	1e-130	NAC domain-containing protein 35 isoform X1
Swissprot	Q9ZVP8	9e-97	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A498JAL7	1e-130	A0A498JAL7_MALDO; Uncharacterized protein
STRING	XP_008339444.1	1e-130	(Malus domestica)
STRING	XP_008382796.1	1e-131	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7203	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	6e-97	NAC domain containing protein 35

Link Out ? help Back to Top
Phytozome	MDP0000679946

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]