PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000682805

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YA

Protein Properties

Length: 112aa MW: 12310.7 Da PI: 10.5822

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000682805	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.8	7.6e-33	16	72	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k k+rkpylheSRh+hAlrR+Rg+gGrF MDP0000682805 16 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKNRKPYLHESRHQHALRRARGCGGRF 72 69*************************9.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.9E-36	14	75	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.071	15	75	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.6E-28	17	72	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.0E-24	18	40	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	20	40	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.0E-24	49	72	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MGIQQAGVPL PSDAVEEPVF VNAKQYHGIL RRRQSRAKAE SENKALKNRK PYLHESRHQH 60 ALRRARGCGG RFLNAKKNGN QPDEMTSGDK SQSNINLNTD KNELASSDGT S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-22	15	78	1	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008383405.1	4e-77	nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	5e-49	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A498IXT7	6e-75	A0A498IXT7_MALDO; Uncharacterized protein
STRING	XP_008383405.1	2e-76	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	2e-51	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	MDP0000682805

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]