PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000688878

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 265aa MW: 29499.6 Da PI: 7.5563

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000688878	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123	2.5e-38	20	147	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 pGf F+Ptde lv++yLk+k+eg++ ++ +vi+e+d++k+eP d+p + + kew+fFs+ d ky +g+r nr t +g+ k tg d+++ ++ MDP0000688878 20 LPGFGFSPTDELLVSYYLKNKIEGTDSHFRHVIPEIDVCKYEPCDIPaFFPEVHGKEWFFFSRLDYKY-NGTRCNRXTGQGFYKITGMDRKIRAEe 114 59*************************999***********545556889*******9.79******************985 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g k++L+fy+gr pk++kt+Wv hey+l MDP0000688878 115 SKAVIGKKRILTFYEGRLPKSKKTNWVXHEYNL 147 66779************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-40	13	168	IPR003441	NAC domain
PROSITE profile	PS51005	41.976	19	170	IPR003441	NAC domain
Pfam	PF02365	8.0E-19	21	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MSXSVAPEEG DAMRVNVSRL PGFGFSPTDE LLVSYYLKNK IEGTDSHFRH VIPEIDVCKY 60 EPCDIPAFFP EVHGKEWFFF SRLDYKYNGT RCNRXTGQGF YKITGMDRKI RAEESKAVIG 120 KKRILTFYEG RLPKSKKTNW VXHEYNLTET KVSSKPTKQM NFVLWRLKNM SASYKKPKGD 180 PIHGELADTG ATSEDYQAAP AHGSTCGPAR EADPWLEHGA HAPPLETLCS TAVHGSAGDF 240 SCQLSDDTSL VATMGPRAGD TFVF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-30	8	176	7	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-30	8	176	7	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-30	8	176	7	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-30	8	176	7	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-30	8	176	10	174	NAC domain-containing protein 19
3swm_B	2e-30	8	176	10	174	NAC domain-containing protein 19
3swm_C	2e-30	8	176	10	174	NAC domain-containing protein 19
3swm_D	2e-30	8	176	10	174	NAC domain-containing protein 19
3swp_A	2e-30	8	176	10	174	NAC domain-containing protein 19
3swp_B	2e-30	8	176	10	174	NAC domain-containing protein 19
3swp_C	2e-30	8	176	10	174	NAC domain-containing protein 19
3swp_D	2e-30	8	176	10	174	NAC domain-containing protein 19
4dul_A	1e-30	8	176	7	171	NAC domain-containing protein 19
4dul_B	1e-30	8	176	7	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.3806	0.0	bud\| fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008354053.2	1e-145	NAC domain-containing protein 91-like
TrEMBL	A0A498KME3	1e-129	A0A498KME3_MALDO; Uncharacterized protein
STRING	XP_008354053.1	1e-145	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13710	5	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	4e-39	TCV-interacting protein

Link Out ? help Back to Top
Phytozome	MDP0000688878