PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000691658

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YC

Protein Properties

Length: 109aa MW: 12084.9 Da PI: 10.2212

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000691658	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	67.7	2.1e-21	56	107	19	69
NF-YC 19 helPlarikkilka.dedvkmisaeaPvllskacelfileltlrswlhaeen 69 h+lPl rikki+k edvkmis eaP+++ska elfi elt rsw+ +++ MDP0000691658 56 HSLPLVRIKKIMKNsGEDVKMISGEAPIVFSKASELFIEELTRRSWMTTQQG 107 99*********6269******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.28E-16	37	108	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.3E-22	53	108	IPR009072	Histone-fold
Pfam	PF00808	9.5E-13	57	107	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MXSSSSNSAG MFSAILVLVH KFCHLTCFRT LVIQLAYHRS VLEFLHGDIT GRSGPHSLPL 60 VRIKKIMKNS GEDVKMISGE APIVFSKASE LFIEELTRRS WMTTQQGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-17	56	108	16	67	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009350655.1	6e-34	PREDICTED: nuclear transcription factor Y subunit C-3-like
TrEMBL	M5WEX8	6e-32	M5WEX8_PRUPE; Uncharacterized protein
STRING	XP_009350655.1	2e-33	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10559	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	6e-18	nuclear factor Y, subunit C3

Link Out ? help Back to Top
Phytozome	MDP0000691658