PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000693678
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 252aa    MW: 27535.6 Da    PI: 6.4233
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000693678genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.4e-191459147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed  l+++v+q+G+++W++I+  ++ gR++k+c++rw + 
    MDP0000693678 14 KGSWSPQEDATLIKLVAQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 59
                     799*****************************.***********985 PP
2Myb_DNA-binding475.8e-1568110347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++ + d  +++a++++G++ W+tIar ++ gRt++ +k++w++ 
    MDP0000693678  68 PFSXQXDSVIIQAHALHGNK-WATIARLLP-GRTDNAIKNHWNST 110
                      6778888999**********.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.411964IPR017930Myb domain
SuperFamilySSF466891.42E-2812107IPR009057Homeodomain-like
SMARTSM007179.0E-161362IPR001005SANT/Myb domain
PfamPF002491.9E-181459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-231567IPR009057Homeodomain-like
CDDcd001676.66E-151658No hitNo description
PROSITE profilePS5129417.92765115IPR017930Myb domain
SMARTSM007173.0E-1165113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2068113IPR009057Homeodomain-like
CDDcd001671.88E-968111No hitNo description
PfamPF002493.8E-1268110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAMKGAXSGE DRVKGSWSPQ EDATLIKLVA QHGPRNWSLI STGIPGRSGK SCRLRWCNQL  60
SPTVQHKPFS XQXDSVIIQA HALHGNKWAT IARLLPGRTD NAIKNHWNST LRRGRQRAEX  120
SSTSSGSDLA AAVGDEPDMK RQCLRASPEH ESLKANAGGE GVIVETSLTL SPPGEKAENE  180
VVLKSEEEED GHEAVDNNDD VENCRVETEE TSLLKIMHRM IAREVRNYID SLRENGGPTF  240
GLQSAAHQND P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-37131133103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7700271e-134KC770027.1 Pyrus pyrifolia microsatellite TXY079 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374172.21e-178transcription factor MYB73-like
SwissprotO231602e-51MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A498KMP30.0A0A498KMP3_MALDO; Uncharacterized protein
STRINGXP_008374172.11e-178(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-53myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]