PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000695359

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C3H

Protein Properties

Length: 241aa MW: 26731.8 Da PI: 4.073

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000695359	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41	3.2e-13	159	181	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+++++tG Ck+G++CkF+H+ MDP0000695359 159 EDCSYYLKTGSCKFGSNCKFNHP 181 89********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	6.67E-7	154	183	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.094	155	183	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-6	155	182	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.7E-11	159	181	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.7E-6	161	181	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MALSEATSVV PPNPETPSTN HAHSDXGSLP SSPDPDPTPS DLXHAVLDEL QKLDLKEPVE 60 EGDXEPDELQ KLDSTEKVEE DGVGELQKLD LKEEEDGAGE LQTLDLKEEE GGEGEEEEEK 120 SSGEREGWEE DGGEVEEKKX EETQESNRRY QYPVRPEAED CSYYLKTGSC KFGSNCKFNH 180 PVSXKTNQGL HSLLLGSMDL DGRIGFSKFS KLRTSKSPHQ GRIDEEMSDL EEVRLLAMFL 240 *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.13055	6e-81	fruit\| leaf\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB545981	2e-49	AB545981.1 Pyrus pyrifolia genes for F-box proteins, S ribonuclease, complete cds, haplotype: S4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009333889.1	8e-89	PREDICTED: zinc finger CCCH domain-containing protein 67-like
TrEMBL	A0A498KV37	1e-92	A0A498KV37_MALDO; Uncharacterized protein
STRING	XP_008346712.1	3e-93	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	3e-14	C3H family protein

Link Out ? help Back to Top
Phytozome	MDP0000695359