PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000696331
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 193aa    MW: 21859.7 Da    PI: 6.3979
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000696331genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.92.6e-0845742049
                   HHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF 20 ilKKAeELSvLCdaevaviifsstgklyey 49
                   i+ K  ELSvL+++ev  i++ss g+++ +
  MDP0000696331 45 IFNKTAELSVLTGVEVVAIVVSSYGQVFCF 74
                   899**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003195.5E-64574IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-84594IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.3634578IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDRDRETNTR CTWFTQIGYV HGVDEFSLIV KGLHKYIGTS SPLVIFNKTA ELSVLTGVEV  60
VAIVVSSYGQ VFCFGSPAPD AIINRNLANN NASLFPADQP DHPTNASKVT IMHRSNKQVE  120
EYMNARTRME AEKIKRGNNN NNIIDHGERG GVWWEKPIET MTNLEELEEY MEALHKLKHN  180
VEVRTNEMIR NI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.26575e-50bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687653e-54HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
GenBankHF9687663e-54HF968766.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, non-columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028963356.11e-44agamous-like MADS-box protein AGL29
TrEMBLA0A251PUI43e-45A0A251PUI4_PRUPE; Uncharacterized protein
STRINGXP_008351558.12e-78(Malus domestica)
STRINGXP_008360640.13e-79(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1658149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-07AGAMOUS-like 61