PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000697407
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family DBB
Protein Properties Length: 302aa    MW: 32408.5 Da    PI: 5.0068
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000697407genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-06447542
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    C+ +e  e++  C  ++  lC  C ++ Hk       H++vpl
  MDP0000697407  4 QCNVCEAAEANVLCCADEAALCWACDEKVHKAnklaskHQRVPL 47
                   7******99*********************88999999999986 PP
2zf-B_box26.61.2e-085292337
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                   ++kC+ ++e    +fC +++ llC++C ++ H        H
  MDP0000697407 52 MPKCDICQEXVGYFFCLEDRALLCRKCDVSVHTAnsfvsaH 92
                   799******99*********************554555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.708147IPR000315B-box-type zinc finger
CDDcd000214.32E-7347No hitNo description
SMARTSM003369.1E-11447IPR000315B-box-type zinc finger
PfamPF006433.6E-5447IPR000315B-box-type zinc finger
PROSITE profilePS501199.035097IPR000315B-box-type zinc finger
SMARTSM003368.4E-155097IPR000315B-box-type zinc finger
PfamPF006431.1E-65291IPR000315B-box-type zinc finger
CDDcd000213.12E-85397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKIQCNVCEA AEANVLCCAD EAALCWACDE KVHKANKLAS KHQRVPLCSS HMPKCDICQE  60
XVGYFFCLED RALLCRKCDV SVHTANSFVS AHRRFLLTGI KVGPEPAEPD SGEGDGVCVG  120
ASSSTXKLHS GSASVSRXET XNPLXVECKA AAPPGGGISX TGGSAAGSXP QCYIDEFLGF  180
SDLDQSFDYI DNGSSKVCAG LIVFNANLAD CSXLGGYDSP VLRSSEEELV DYECIGEVPE  240
TSWMVPQVPS PPTASGLYWP KSFQNPSDSS TMFVPDICHS QMQNPLRSQH NGTISKRRRQ  300
F*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.10050.0bud| cell culture| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028944947.10.0B-box zinc finger protein 22-like
SwissprotQ9SYM24e-78BBX22_ARATH; B-box zinc finger protein 22
TrEMBLD9ZIW30.0D9ZIW3_MALDO; COL domain class transcription factor
STRINGXP_009376736.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.28e-71light-regulated zinc finger protein 1