PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000701272
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 728aa    MW: 79101.4 Da    PI: 4.986
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000701272genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.88.4e-3085169187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  MDP0000701272  85 RWPRQETLALLKIRSDMDVAFRDATLKGPLWEDVSRKLAELGYRRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSELEA 169
                    8*********************************************************************866665..******985 PP
2trihelix104.86.3e-33474559187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW+k evlaLi++r+ +e+r++++  k+plWee+s+ m + g++rs k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a
  MDP0000701272 474 RWPKAEVLALIKLRSGLESRYQDAGPKGPLWEEISAGMGRMGYNRSCKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 559
                    8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.03682144IPR001005SANT/Myb domain
PROSITE profilePS500906.44684142IPR017877Myb-like domain
CDDcd122036.08E-2784149No hitNo description
PfamPF138375.9E-2184170No hitNo description
PROSITE profilePS500906.969467531IPR017877Myb-like domain
SMARTSM007176.2E-4471533IPR001005SANT/Myb domain
PfamPF138372.1E-22473560No hitNo description
CDDcd122031.89E-29474538No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MQQPAAGGAG GSQTHYGGAG EMSAAEAAAA EQGQLVVEAA SPISSRPPAS AAVNLDELMT  60
LSGAAAAAED ALADRGGGGG STGNRWPRQE TLALLKIRSD MDVAFRDATL KGPLWEDVSR  120
KLAELGYRRN AKKCKEKFEN VHKYYKRTKE GRAGRQDGKS YKFFSELEAL HGTAATAAAT  180
TANVSASPAV HAASPNPVSV GLGSASNPMP ISSFRMSHQQ QPPSSTAIPI IPSSQPTATP  240
TDFNFSSNSS STSPGTDDDD DDDDAEGERX SRKRKXGSAS TSTGISGGGS TRKMMDFFEV  300
LMKQVMQKQE SMQQRFLEVI EKREQDRTIR EEAWKRQEMA RLTREQELMS QERAISASRD  360
AAIISFLQKI TGQTIQLPPP VNVHAAPPPP VPPSVSVVTP LPQTTPQPTT QTYQTPQQQQ  420
PQPPQQMQQV RHXQQTQAVQ PVMAVPEQQV PPTAQENIGS GGGGGSSEPA SSSRWPKAEV  480
LALIKLRSGL ESRYQDAGPK GPLWEEISAG MGRMGYNRSC KRCKEKWENI NKYFKKVKES  540
NKKRPEDAKT CPYFHELDAL YRKRVLGGGS TGGSSSSLGN RLEQQPQQPE QEQVVAGSEN  600
KNADDSTDVE TNLRANLFGE GTEEAAKKPE DIVKELMEVH DHQQVLQQGH PQHFGVDDCN  660
RVEEADSDNL MDQEEEDMED EDMDEEDDEE TEQERKMAYK IEFQKQNTGP SSNGGGNGAP  720
SFLAXVQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.124030.0bud| cell culture| fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008360728.20.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A498I6X30.0A0A498I6X3_MALDO; Uncharacterized protein
STRINGXP_008360728.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-46Trihelix family protein