PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000703990
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 221aa    MW: 24582.2 Da    PI: 11.2255
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000703990genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA40.15.2e-134067532
           GATA  5 gttkTplWRrgpdgnktLCnaCGlyyrk 32
                    + kTp+WR  p g+ktLCnaCG++y++
  MDP0000703990 40 ASEKTPQWRARPIGPKTLCNACGVRYKS 67
                   5679**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.2623066IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-83080IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-113293No hitNo description
CDDcd002023.14E-83579No hitNo description
Gene3DG3DSA:3.30.50.103.6E-103567IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.1E-113667IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MKRNSPKKTI LSQNSPAGPN MPKREPLEAS PSPLRCTHLA SEKTPQWRAR PIGPKTLCNA  60
CGVRYKSGWL VPEYRPSASL TFVLTQHSNS YRKVLELRRQ NEASQQQAPL NPKPSYKSGP  120
GSQSPSSLSF KPSSPPVSPV HRQQLQDQVR PRTTASICAF SATHDLGVHS VTIHVSCTPS  180
EHLRQYLKTF ANLHQIILDS QKRLRLLQRI GRGNAVVLWQ *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.117911e-115fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-36GATA transcription factor 4