PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000704216
Common NameAP2D6
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 236aa    MW: 25947.2 Da    PI: 4.472
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000704216genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-193584255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   +ykGVr +k +g+Wv+eIr p   + +  r++lg+++t+e+Aa+a +aa  +l+g
  MDP0000704216 35 KYKGVRKRK-WGKWVSEIRLP---N-CrERIWLGSYDTPEKAARAFDAALFCLRG 84
                   8*****999.**********8...3.45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-343598IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-293593IPR001471AP2/ERF domain
PROSITE profilePS5103222.0623592IPR001471AP2/ERF domain
PfamPF008471.2E-113584IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-203593IPR016177DNA-binding domain
CDDcd000185.25E-303594No hitNo description
PRINTSPR003671.5E-93647IPR001471AP2/ERF domain
PRINTSPR003671.5E-95874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSNHFSKIFD TSSSSSSSXM LNQTSGEPSE RNDVKYKGVR KRKWGKWVSE IRLPNCRERI  60
WLGSYDTPEK AARAFDAALF CLRGRTAKFN FPDNPPDIPG GRSLSPAEIQ VEAARFANSE  120
IPRSHQSMSA PQAECQSMSE LQAESQSPSL SEGSGTAFMD TDFQVTPNES LSDLFGSFGS  180
GNYATEYGLF PGFDEMNGQF FSPASAAPTP AVDYAEENLD GQFFNPAQES FLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1535921472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642KGVRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302670.0stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324300.0GU732430.1 Malus x domestica AP2 domain class transcription factor (AP2D6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315677.11e-170ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-56ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2P1MA351e-170A0A2P1MA35_MALDO; Ethylene respone factor 17-8s
STRINGXP_008344047.11e-172(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]
  3. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  4. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]