PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000708770

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 207aa MW: 23267.3 Da PI: 6.5256

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000708770	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.3	9.5e-27	52	141	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA++vGF vr+ + ++s +g++ r++ C+k+g++ ++ k e+++r++ r gCka++ vk+ek+gkw+vt+++++HnH+l+ MDP0000708770 52 KFYXDYARQVGFVVRVMQRRRSGIDGRTLARRLGCNKQGFSPNQPGKFGPEKKPRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 141 6*****************************************9999**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.7E-25	52	141	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MDSVTCYMTV DLEKEAEAEV DSAVEMDVGT XGGXVPEPYV GMEFDSEDAA RKFYXDYARQ 60 VGFVVRVMQR RRSGIDGRTL ARRLGCNKQG FSPNQPGKFG PEKKPRPSAR EGCKATILVK 120 MEKSGKWVVT RFVKDHNHPL VVTANGFSTE GDKDRKIEEL TXELEHQDQR CAAYREKLLS 180 FMHNVEAETE ELSGKIQVIV ENVRKS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009349289.1	1e-144	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_009349298.1	1e-144	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Swissprot	Q9SZL8	2e-23	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A498JRX5	1e-146	A0A498JRX5_MALDO; Uncharacterized protein
STRING	XP_009349289.1	1e-144	(Pyrus x bretschneideri)
STRING	XP_009349298.1	1e-144	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	1e-72	FAR1 family protein

Link Out ? help Back to Top
Phytozome	MDP0000708770

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]